PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400007139
Common NameLOC102582568
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 184aa    MW: 20354.5 Da    PI: 5.394
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400007139genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.68.3e-10154182134
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslg 34 
                           s+y+GV++++++grW+++I+d      + k+++lg
  PGSC0003DMP400007139 154 SQYRGVTFYRRTGRWESHIWD------CgKQVYLG 182
                           78*******************......55****98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.755155183IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MWDLNESEEG CSTPIEFECD DEKGKRVGSV SNSSSSAVAV DDISEEELDG ERGKKKRGTP  60
PSKIFGFSMV GPGNGDEEQP VTRQFFPVDE SEMGGVAAAE NGSPNFPRAH WVGVKFYQTE  120
TLGNTGLAKP VDMVQQQQQQ PIKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY  180
LGI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0136400.0BT013640.1 Lycopersicon esculentum clone 132443F, mRNA sequence.
GenBankHQ5869510.0HQ586951.1 Solanum lycopersicum AP2 transcription factor SlAP2c mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339870.11e-131PREDICTED: floral homeotic protein APETALA 2
SwissprotP479272e-32AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLM0ZXP91e-133M0ZXP9_SOLTU; Uncharacterized protein
TrEMBLM0ZXQ01e-134M0ZXQ0_SOLTU; Uncharacterized protein
TrEMBLM0ZXQ11e-131M0ZXQ1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000102311e-131(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.28e-29AP2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]